3D structure

PDB id
8VOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
8VOO|1|D|U|793
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VOO_022 not in the Motif Atlas
Geometric match to HL_5J7L_017
Geometric discrepancy: 0.0806
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8VOO|1|D|G|786
8VOO|1|D|A|787
8VOO|1|D|U|788
8VOO|1|D|U|789
8VOO|1|D|A|790
8VOO|1|D|G|791
8VOO|1|D|A|792
8VOO|1|D|U|793
8VOO|1|D|A|794
8VOO|1|D|C|795
8VOO|1|D|C|796

Current chains

Chain D
16S rRNA

Nearby chains

Chain 7
mRNA with 39 nt long spacer
Chain A
Transfer RNA; tRNA
Chain B
Transfer RNA; tRNA
Chain Q
30S ribosomal protein S11
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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