HL_8VOO_046

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8VOO|1|a|G|386

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOO_046 not in the Motif Atlas

Geometric match to HL_5J7L_145

Geometric discrepancy: 0.0822

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VOO|1|a|A|382
8VOO|1|a|C|383
8VOO|1|a|A|384
8VOO|1|a|C|385
8VOO|1|a|G|386
8VOO|1|a|U|387
8VOO|1|a|G|388
8VOO|1|a|G|389
8VOO|1|a|U|390
8VOO|1|a|A|391
8VOO|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28