HL_8VOP_080

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

8VOP|1|a|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOP_080 not in the Motif Atlas

Geometric match to HL_4LGT_001

Geometric discrepancy: 0.2497

The information below is about HL_4LGT_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8VOP|1|a|C|2143
8VOP|1|a|G|2144
8VOP|1|a|C|2145
8VOP|1|a|C|2146
8VOP|1|a|A|2147
8VOP|1|a|G|2148

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA