HL_8VOP_087

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8VOP|1|a|A|2406

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOP_087 not in the Motif Atlas

Geometric match to HL_5J7L_192

Geometric discrepancy: 0.0593

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8VOP|1|a|U|2404
8VOP|1|a|G|2405
8VOP|1|a|A|2406
8VOP|1|a|A|2407
8VOP|1|a|U|2408
8VOP|1|a|G|2409
8VOP|1|a|G|2410
8VOP|1|a|A|2411
8VOP|1|a|A|2412
8VOP|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15