3D structure

PDB id
8VOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGAAGUAG
Length
8 nucleotides
Bulged bases
8VOR|1|a|G|2529
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VOR_089 not in the Motif Atlas
Geometric match to HL_5J7L_194
Geometric discrepancy: 0.0849
The information below is about HL_5J7L_194
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_31585.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
20

Unit IDs

8VOR|1|a|U|2528
8VOR|1|a|G|2529
8VOR|1|a|A|2530
8VOR|1|a|A|2531
8VOR|1|a|G|2532
8VOR|1|a|U|2533
8VOR|1|a|A|2534
8VOR|1|a|G|2535

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L6
Chain q
50S ribosomal protein L36

Coloring options:


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