HL_8VOS_039

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_039 not in the Motif Atlas

Geometric match to HL_5J7L_138

Geometric discrepancy: 0.1068

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VOS|1|a|U|158
8VOS|1|a|G|159
8VOS|1|a|A|160
8VOS|1|a|A|161
8VOS|1|a|U|162
8VOS|1|a|C|163
8VOS|1|a|C|164
8VOS|1|a|A|165
8VOS|1|a|U|166
8VOS|1|a|A|167
8VOS|1|a|G|168

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28