3D structure

PDB id
8VOS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
ACACGUGGUAU
Length
11 nucleotides
Bulged bases
8VOS|1|a|G|386
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VOS_046 not in the Motif Atlas
Geometric match to HL_5J7L_145
Geometric discrepancy: 0.0684
The information below is about HL_5J7L_145
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91503.7
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

8VOS|1|a|A|382
8VOS|1|a|C|383
8VOS|1|a|A|384
8VOS|1|a|C|385
8VOS|1|a|G|386
8VOS|1|a|U|387
8VOS|1|a|G|388
8VOS|1|a|G|389
8VOS|1|a|U|390
8VOS|1|a|A|391
8VOS|1|a|U|392

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L28

Coloring options:


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