HL_8VOS_072

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8VOS|1|a|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_072 not in the Motif Atlas

Geometric match to HL_5J7L_174

Geometric discrepancy: 0.0836

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VOS|1|a|A|1630
8VOS|1|a|G|1631
8VOS|1|a|A|1632
8VOS|1|a|G|1633
8VOS|1|a|A|1634
8VOS|1|a|A|1635
8VOS|1|a|U|1636

Current chains

Chain a

23S rRNA

Nearby chains