HL_8VPK_031
3D structure
- PDB id
- 8VPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGUAAUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VPK_031 not in the Motif Atlas
- Homologous match to HL_6PRV_002
- Geometric discrepancy: 0.2214
- The information below is about HL_6PRV_002
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8VPK|1|A|C|1210
8VPK|1|A|G|1211
8VPK|1|A|U|1212
8VPK|1|A|A|1213
8VPK|1|A|A|1214
8VPK|1|A|U|1215
8VPK|1|A|A|1216
8VPK|1|A|G|1217
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain G
- 50S ribosomal protein L6
- Chain J
- 50S ribosomal protein L11
- Chain f
- 50S ribosomal protein L36
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