HL_8VPK_043

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8VPK|1|A|A|1852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VPK_043 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0804

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VPK|1|A|A|1848
8VPK|1|A|G|1849
8VPK|1|A|A|1850
8VPK|1|A|G|1851
8VPK|1|A|A|1852
8VPK|1|A|A|1853
8VPK|1|A|U|1854

Current chains

Chain A

23S ribosomal RNA

Nearby chains