HL_8VS9_006

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8VS9|1|16S|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.2356

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VS9|1|16S|G|259
8VS9|1|16S|G|260
8VS9|1|16S|U|261
8VS9|1|16S|A|262
8VS9|1|16S|A|263
8VS9|1|16S|C|264
8VS9|1|16S|G|265
8VS9|1|16S|G|266
8VS9|1|16S|C|267

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S17

Small ribosomal subunit protein uS17

Chain S20

30S ribosomal protein S20