HL_8VS9_009

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8VS9|1|16S|A|344

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.3859

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8VS9|1|16S|C|342
8VS9|1|16S|U|343
8VS9|1|16S|A|344
8VS9|1|16S|C|345
8VS9|1|16S|G|346
8VS9|1|16S|G|347

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain L14

50S ribosomal protein L14

Chain L19

50S ribosomal protein L19