HL_8VS9_018

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

8VS9|1|16S|U|842, 8VS9|1|16S|G|844, 8VS9|1|16S|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_018 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1873

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8VS9|1|16S|C|840
8VS9|1|16S|C|841
8VS9|1|16S|U|842
8VS9|1|16S|U|843
8VS9|1|16S|G|844
8VS9|1|16S|A|845
8VS9|1|16S|G|846

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S18

30S ribosomal protein S18