HL_8VS9_020

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_020 not in the Motif Atlas

Homologous match to HL_5J7L_020

Geometric discrepancy: 0.0916

The information below is about HL_5J7L_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VS9|1|16S|C|897
8VS9|1|16S|G|898
8VS9|1|16S|C|899
8VS9|1|16S|A|900
8VS9|1|16S|A|901
8VS9|1|16S|G|902

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA