HL_8VS9_021
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 8VS9|1|16S|U|965, 8VS9|1|16S|G|971
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VS9_021 not in the Motif Atlas
- Homologous match to HL_5J7L_021
- Geometric discrepancy: 0.2215
- The information below is about HL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VS9|1|16S|G|963
8VS9|1|16S|A|964
8VS9|1|16S|U|965
8VS9|1|16S|G|966
8VS9|1|16S|C|967
8VS9|1|16S|A|968
8VS9|1|16S|A|969
8VS9|1|16S|C|970
8VS9|1|16S|G|971
8VS9|1|16S|C|972
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S09
- Small ribosomal subunit protein uS9
- Chain S10
- 30S ribosomal protein S10
- Chain S13
- 30S ribosomal protein S13
- Chain S14
- Small ribosomal subunit protein uS14
- Chain SMPB
- SsrA-binding protein
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