HL_8VS9_031

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_031 not in the Motif Atlas

Geometric match to HL_4V88_222

Geometric discrepancy: 0.2705

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8VS9|1|16S|G|1515
8VS9|1|16S|G|1516
8VS9|1|16S|G|1517
8VS9|1|16S|A|1518
8VS9|1|16S|A|1519
8VS9|1|16S|C|1520

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA