3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUGACAGCC
Length
9 nucleotides
Bulged bases
8VS9|1|23S|G|329, 8VS9|1|23S|A|330, 8VS9|1|23S|C|331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VS9_041 not in the Motif Atlas
Homologous match to HL_5J7L_144
Geometric discrepancy: 0.1748
The information below is about HL_5J7L_144
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_27670.2
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
13

Unit IDs

8VS9|1|23S|G|327
8VS9|1|23S|U|328
8VS9|1|23S|G|329
8VS9|1|23S|A|330
8VS9|1|23S|C|331
8VS9|1|23S|A|332
8VS9|1|23S|G|333
8VS9|1|23S|C|334
8VS9|1|23S|C|335

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain L04
50S ribosomal protein L4
Chain L24
50S ribosomal protein L24

Coloring options:


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