HL_8VS9_041
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 8VS9|1|23S|G|329, 8VS9|1|23S|A|330, 8VS9|1|23S|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VS9_041 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.1748
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
8VS9|1|23S|G|327
8VS9|1|23S|U|328
8VS9|1|23S|G|329
8VS9|1|23S|A|330
8VS9|1|23S|C|331
8VS9|1|23S|A|332
8VS9|1|23S|G|333
8VS9|1|23S|C|334
8VS9|1|23S|C|335
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain L04
- 50S ribosomal protein L4
- Chain L24
- 50S ribosomal protein L24
Coloring options: