HL_8VS9_056

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

8VS9|1|23S|U|958, 8VS9|1|23S|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_056 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1623

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8VS9|1|23S|U|955
8VS9|1|23S|G|956
8VS9|1|23S|C|957
8VS9|1|23S|U|958
8VS9|1|23S|A|959
8VS9|1|23S|A|960
8VS9|1|23S|C|961
8VS9|1|23S|G|962

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 5S

5S ribosomal RNA; 5S rRNA

Chain L16

50S ribosomal protein L16