3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GUAACUAUAAC
Length
11 nucleotides
Bulged bases
8VS9|1|23S|A|1913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VS9_078 not in the Motif Atlas
Geometric match to HL_5TBW_049
Geometric discrepancy: 0.2521
The information below is about HL_5TBW_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8VS9|1|23S|G|1910
8VS9|1|23S|U|1911
8VS9|1|23S|A|1912
8VS9|1|23S|A|1913
8VS9|1|23S|C|1914
8VS9|1|23S|U|1915
8VS9|1|23S|A|1916
8VS9|1|23S|U|1917
8VS9|1|23S|A|1918
8VS9|1|23S|A|1919
8VS9|1|23S|C|1920

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain 16S
Small subunit ribosomal RNA; SSU rRNA
Chain ATRN
Transfer RNA; tRNA
Chain SMPB
SsrA-binding protein
Chain TMRN
Transfer-messenger RNA; tmRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0982 s