HL_8VS9_078
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 8VS9|1|23S|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VS9_078 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.2521
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VS9|1|23S|G|1910
8VS9|1|23S|U|1911
8VS9|1|23S|A|1912
8VS9|1|23S|A|1913
8VS9|1|23S|C|1914
8VS9|1|23S|U|1915
8VS9|1|23S|A|1916
8VS9|1|23S|U|1917
8VS9|1|23S|A|1918
8VS9|1|23S|A|1919
8VS9|1|23S|C|1920
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
- Chain 16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain ATRN
- Transfer RNA; tRNA
- Chain SMPB
- SsrA-binding protein
- Chain TMRN
- Transfer-messenger RNA; tmRNA
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