HL_8VS9_080

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8VS9|1|23S|A|2030, 8VS9|1|23S|A|2031, 8VS9|1|23S|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_080 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1662

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

8VS9|1|23S|G|2027
8VS9|1|23S|U|2028
8VS9|1|23S|G|2029
8VS9|1|23S|A|2030
8VS9|1|23S|A|2031
8VS9|1|23S|G|2032
8VS9|1|23S|A|2033
8VS9|1|23S|U|2034
8VS9|1|23S|G|2035
8VS9|1|23S|C|2036

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L21

Ribosomal protein L21

Chain L32

50S ribosomal protein L32