HL_8VS9_084

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8VS9|1|23S|A|2268, 8VS9|1|23S|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_084 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1203

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8VS9|1|23S|C|2264
8VS9|1|23S|U|2265
8VS9|1|23S|A|2266
8VS9|1|23S|A|2267
8VS9|1|23S|A|2268
8VS9|1|23S|G|2269
8VS9|1|23S|A|2270
8VS9|1|23S|G|2271
8VS9|1|23S|U|2272
8VS9|1|23S|A|2273
8VS9|1|23S|A|2274
8VS9|1|23S|C|2275
8VS9|1|23S|G|2276

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain 5S

5S ribosomal RNA; 5S rRNA

Chain L16

50S ribosomal protein L16

Chain L27

50S ribosomal protein L27