HL_8VS9_085

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_085 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2751

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VS9|1|23S|G|2303
8VS9|1|23S|G|2304
8VS9|1|23S|U|2305
8VS9|1|23S|C|2306
8VS9|1|23S|G|2307
8VS9|1|23S|G|2308
8VS9|1|23S|A|2309
8VS9|1|23S|C|2310
8VS9|1|23S|A|2311
8VS9|1|23S|U|2312
8VS9|1|23S|C|2313

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L05

50S ribosomal protein L5

Chain TMRN

Transfer-messenger RNA; tmRNA