HL_8VS9_086

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_086 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1082

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8VS9|1|23S|U|2324
8VS9|1|23S|G|2325
8VS9|1|23S|C|2326
8VS9|1|23S|A|2327
8VS9|1|23S|A|2328
8VS9|1|23S|U|2329
8VS9|1|23S|G|2330
8VS9|1|23S|G|2331

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L27

50S ribosomal protein L27

Chain TMRN

Transfer-messenger RNA; tmRNA; 10Sa RNA; SsrA