HL_8VS9_091

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

8VS9|1|23S|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_091 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1948

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8VS9|1|23S|U|2528
8VS9|1|23S|G|2529
8VS9|1|23S|A|2530
8VS9|1|23S|A|2531
8VS9|1|23S|G|2532
8VS9|1|23S|U|2533
8VS9|1|23S|A|2534
8VS9|1|23S|G|2535

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6

Chain L36

50S ribosomal protein L36