HL_8VS9_105

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8VS9|1|ETRN|G|18, 8VS9|1|ETRN|G|19, 8VS9|1|ETRN|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_105 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.2363

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8VS9|1|ETRN|C|13
8VS9|1|ETRN|A|14
8VS9|1|ETRN|G|15
8VS9|1|ETRN|C|16
8VS9|1|ETRN|C|17
8VS9|1|ETRN|U|17|||A
8VS9|1|ETRN|G|18
8VS9|1|ETRN|G|19
8VS9|1|ETRN|U|20
8VS9|1|ETRN|A|21
8VS9|1|ETRN|G|22

Current chains

Chain ETRN

E-tRNA

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA

Chain L1

50S ribosomal protein L1