HL_8VS9_106
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VS9_106 not in the Motif Atlas
- Homologous match to HL_1H3E_002
- Geometric discrepancy: 0.4045
- The information below is about HL_1H3E_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8VS9|1|ETRN|G|31
8VS9|1|ETRN|C|32
8VS9|1|ETRN|U|33
8VS9|1|ETRN|C|34
8VS9|1|ETRN|A|35
8VS9|1|ETRN|U|36
8VS9|1|ETRN|A|37
8VS9|1|ETRN|A|38
8VS9|1|ETRN|C|39
Current chains
- Chain ETRN
- E-tRNA
Nearby chains
- Chain 16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain S07
- 30S ribosomal protein S7
- Chain S11
- 30S ribosomal protein S11
- Chain SMPB
- SsrA-binding protein
Coloring options: