HL_8VS9_113

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUCAACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_113 not in the Motif Atlas

Homologous match to HL_4V8Q_110

Geometric discrepancy: 0.3723

The information below is about HL_4V8Q_110

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8VS9|1|TMRN|G|340
8VS9|1|TMRN|U|341
8VS9|1|TMRN|U|342
8VS9|1|TMRN|C|343
8VS9|1|TMRN|A|344
8VS9|1|TMRN|A|345
8VS9|1|TMRN|C|346
8VS9|1|TMRN|U|347
8VS9|1|TMRN|C|348

Current chains

Chain TMRN

TMRN

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA

Chain L05

50S ribosomal protein L5

Chain SMPB

SsrA-binding protein