HL_8VSA_036

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_036 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2597

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VSA|1|23S|U|158
8VSA|1|23S|G|159
8VSA|1|23S|A|160
8VSA|1|23S|A|161
8VSA|1|23S|U|162
8VSA|1|23S|C|163
8VSA|1|23S|C|164
8VSA|1|23S|A|165
8VSA|1|23S|U|166
8VSA|1|23S|A|167
8VSA|1|23S|G|168

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L09

Large ribosomal subunit protein bL9

Chain L28

50S ribosomal protein L28