HL_8VSA_042

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8VSA|1|23S|G|386, 8VSA|1|23S|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_042 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2098

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VSA|1|23S|A|382
8VSA|1|23S|C|383
8VSA|1|23S|A|384
8VSA|1|23S|C|385
8VSA|1|23S|G|386
8VSA|1|23S|U|387
8VSA|1|23S|G|388
8VSA|1|23S|G|389
8VSA|1|23S|U|390
8VSA|1|23S|A|391
8VSA|1|23S|U|392

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L28

50S ribosomal protein L28