HL_8VSA_066

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

8VSA|1|23S|A|1453, 8VSA|1|23S|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_066 not in the Motif Atlas

Geometric match to HL_8VTW_008

Geometric discrepancy: 0.3596

The information below is about HL_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8VSA|1|23S|G|1450
8VSA|1|23S|C|1451
8VSA|1|23S|G|1452
8VSA|1|23S|A|1453
8VSA|1|23S|C|1454
8VSA|1|23S|G|1455
8VSA|1|23S|G|1456
8VSA|1|23S|U|1457
8VSA|1|23S|U|1458
8VSA|1|23S|G|1459
8VSA|1|23S|U|1460
8VSA|1|23S|C|1461

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L17

Large ribosomal subunit protein bL17