HL_8VSA_075

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

8VSA|1|23S|A|1780, 8VSA|1|23S|U|1781, 8VSA|1|23S|U|1782, 8VSA|1|23S|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_075 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.1999

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8VSA|1|23S|U|1777
8VSA|1|23S|U|1778
8VSA|1|23S|U|1779
8VSA|1|23S|A|1780
8VSA|1|23S|U|1781
8VSA|1|23S|U|1782
8VSA|1|23S|A|1783
8VSA|1|23S|A|1784
8VSA|1|23S|A|1785
8VSA|1|23S|A|1786
8VSA|1|23S|A|1787

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2

Chain L34

50S ribosomal protein L34