HL_8VSA_097

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8VSA|1|23S|G|2751, 8VSA|1|23S|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_097 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1288

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8VSA|1|23S|C|2745
8VSA|1|23S|U|2746
8VSA|1|23S|G|2747
8VSA|1|23S|A|2748
8VSA|1|23S|A|2749
8VSA|1|23S|A|2750
8VSA|1|23S|G|2751
8VSA|1|23S|C|2752
8VSA|1|23S|A|2753
8VSA|1|23S|U|2754
8VSA|1|23S|C|2755
8VSA|1|23S|U|2756
8VSA|1|23S|A|2757
8VSA|1|23S|A|2758
8VSA|1|23S|G|2759

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6

Chain L13

50S ribosomal protein L13

Chain L36

50S ribosomal protein L36