HL_8VTW_190

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

8VTW|1|2a|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTW_190 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1007

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8VTW|1|2a|G|786
8VTW|1|2a|A|787
8VTW|1|2a|U|788
8VTW|1|2a|U|789
8VTW|1|2a|A|790
8VTW|1|2a|G|791
8VTW|1|2a|A|792
8VTW|1|2a|U|793
8VTW|1|2a|A|794
8VTW|1|2a|C|795
8VTW|1|2a|C|796

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11

Chain 2y

Ribosome-associated inhibitor A