HL_8VTX_106
3D structure
- PDB id
- 8VTX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 8VTX|1|1x|G|18, 8VTX|1|1x|G|19, 8VTX|1|1x|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VTX_106 not in the Motif Atlas
- Homologous match to HL_6CFJ_106
- Geometric discrepancy: 0.1066
- The information below is about HL_6CFJ_106
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_63054.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8VTX|1|1x|C|13
8VTX|1|1x|A|14
8VTX|1|1x|G|15
8VTX|1|1x|C|16
8VTX|1|1x|C|17
8VTX|1|1x|U|17|||A
8VTX|1|1x|G|18
8VTX|1|1x|G|19
8VTX|1|1x|U|20
8VTX|1|1x|A|21
8VTX|1|1x|G|22
Current chains
- Chain 1x
- Aminoacylated fMet-tRNAmet
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 50S ribosomal protein L5
Coloring options: