HL_8VUP_005

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VUP_005 not in the Motif Atlas

Geometric match to HL_5J7L_138

Geometric discrepancy: 0.289

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VUP|1|1|U|158
8VUP|1|1|G|159
8VUP|1|1|A|160
8VUP|1|1|A|161
8VUP|1|1|U|162
8VUP|1|1|C|163
8VUP|1|1|C|164
8VUP|1|1|A|165
8VUP|1|1|U|166
8VUP|1|1|A|167
8VUP|1|1|G|168

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein bL9

Chain X

50S ribosomal protein L28