HL_8VVP_048

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8VVP|1|WA|U|2633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_048 not in the Motif Atlas

Geometric match to HL_8CRE_036

Geometric discrepancy: 0.2193

The information below is about HL_8CRE_036

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8VVP|1|WA|G|2626
8VVP|1|WA|U|2627
8VVP|1|WA|U|2628
8VVP|1|WA|C|2629
8VVP|1|WA|U|2630
8VVP|1|WA|C|2631
8VVP|1|WA|U|2632
8VVP|1|WA|U|2633
8VVP|1|WA|U|2634

Current chains

Chain WA

28S rRNA

Nearby chains

Chain Q

eL19

Chain T

eL22