HL_8VVP_060
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 8VVP|1|WA|A|3762
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVP_060 not in the Motif Atlas
- Geometric match to HL_8CRE_047
- Geometric discrepancy: 0.0892
- The information below is about HL_8CRE_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8VVP|1|WA|G|3759
8VVP|1|WA|U|3760
8VVP|1|WA|A|3761
8VVP|1|WA|A|3762
8VVP|1|WA|C|3763
8VVP|1|WA|U|3764
8VVP|1|WA|A|3765
8VVP|1|WA|U|3766
8VVP|1|WA|G|3767
8VVP|1|WA|A|3768
8VVP|1|WA|C|3769
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain SA
- Transfer RNA; tRNA
- Chain UA
- Transfer RNA; tRNA
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
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