HL_8VVP_061

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8VVP|1|WA|U|3804

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_061 not in the Motif Atlas

Geometric match to HL_8CRE_048

Geometric discrepancy: 0.0765

The information below is about HL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8VVP|1|WA|U|3798
8VVP|1|WA|C|3799
8VVP|1|WA|U|3800
8VVP|1|WA|A|3801
8VVP|1|WA|A|3802
8VVP|1|WA|U|3803
8VVP|1|WA|U|3804
8VVP|1|WA|A|3805
8VVP|1|WA|G|3806

Current chains

Chain WA

28S rRNA

Nearby chains

Chain U

L23

Chain ZA

Small subunit ribosomal RNA; SSU rRNA