HL_8VVP_109
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8VVP|1|ZA|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVP_109 not in the Motif Atlas
- Geometric match to HL_5J7L_017
- Geometric discrepancy: 0.0989
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8VVP|1|ZA|G|1054
8VVP|1|ZA|A|1055
8VVP|1|ZA|U|1056
8VVP|1|ZA|C|1057
8VVP|1|ZA|A|1058
8VVP|1|ZA|G|1059
8VVP|1|ZA|A|1060
8VVP|1|ZA|U|1061
8VVP|1|ZA|A|1062
8VVP|1|ZA|C|1063
8VVP|1|ZA|C|1064
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain AC
- S26
- Chain OB
- S14
- Chain SA
- Transfer RNA; tRNA
- Chain TA
- Transfer RNA; tRNA
- Chain VA
- mRNA
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
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