HL_8VVQ_014

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8VVQ|1|WA|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_014 not in the Motif Atlas

Geometric match to HL_3VJR_001

Geometric discrepancy: 0.3047

The information below is about HL_3VJR_001

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop with 2 bulged bases not stacked

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8VVQ|1|WA|U|204
8VVQ|1|WA|C|205
8VVQ|1|WA|U|206
8VVQ|1|WA|G|207
8VVQ|1|WA|A|208
8VVQ|1|WA|U|209
8VVQ|1|WA|C|210
8VVQ|1|WA|G|211

Current chains

Chain WA

28S rRNA

Nearby chains

Chain DA

L32

Chain X

L26