HL_8VVQ_017
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 8VVQ|1|WA|G|294, 8VVQ|1|WA|A|295, 8VVQ|1|WA|A|296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVQ_017 not in the Motif Atlas
- Geometric match to HL_8P9A_120
- Geometric discrepancy: 0.1085
- The information below is about HL_8P9A_120
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_63894.2
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
8VVQ|1|WA|C|289
8VVQ|1|WA|U|290
8VVQ|1|WA|U|291
8VVQ|1|WA|G|292
8VVQ|1|WA|G|293
8VVQ|1|WA|G|294
8VVQ|1|WA|A|295
8VVQ|1|WA|A|296
8VVQ|1|WA|U|297
8VVQ|1|WA|G|298
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain K
- eL13
- Chain M
- L15
- Chain NA
- eL42
- Chain P
- eL18
- Chain Z
- L27A
Coloring options: