HL_8VVQ_030

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

8VVQ|1|WA|C|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_030 not in the Motif Atlas

Homologous match to HL_9PN5_018

Geometric discrepancy: 0.497

The information below is about HL_9PN5_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.5

Basepair signature

cWW-cWW-F

Number of instances in this motif group

7

Unit IDs

8VVQ|1|WA|G|1481
8VVQ|1|WA|C|1482
8VVQ|1|WA|C|1483
8VVQ|1|WA|G|1484
8VVQ|1|WA|C|1485
8VVQ|1|WA|G|1486
8VVQ|1|WA|C|1487
8VVQ|1|WA|C|1488

Current chains

Chain WA

28S rRNA

Nearby chains

Chain HA

L36

Chain K

eL13