HL_8VVQ_033

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8VVQ|1|WA|A|1632, 8VVQ|1|WA|G|1635

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_033 not in the Motif Atlas

Geometric match to HL_8P9A_133

Geometric discrepancy: 0.0866

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8VVQ|1|WA|G|1629
8VVQ|1|WA|C|1630
8VVQ|1|WA|G|1631
8VVQ|1|WA|A|1632
8VVQ|1|WA|A|1633
8VVQ|1|WA|A|1634
8VVQ|1|WA|G|1635
8VVQ|1|WA|A|1636
8VVQ|1|WA|C|1637

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain IA

L37

Chain M

L15