HL_8VVQ_040

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_040 not in the Motif Atlas

Geometric match to HL_6PRV_002

Geometric discrepancy: 0.2183

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VVQ|1|WA|U|2008
8VVQ|1|WA|G|2009
8VVQ|1|WA|U|2010
8VVQ|1|WA|A|2011
8VVQ|1|WA|A|2012
8VVQ|1|WA|C|2013
8VVQ|1|WA|A|2014
8VVQ|1|WA|A|2015

Current chains

Chain WA

28S rRNA

Nearby chains

Chain LA

eL40

Chain RA

L12

Chain UA

Transfer RNA; tRNA