HL_8VVQ_045

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_045 not in the Motif Atlas

Geometric match to HL_8CRE_032

Geometric discrepancy: 0.1571

The information below is about HL_8CRE_032

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VVQ|1|WA|C|2460
8VVQ|1|WA|G|2461
8VVQ|1|WA|A|2462
8VVQ|1|WA|G|2463
8VVQ|1|WA|C|2464
8VVQ|1|WA|G|2465

Current chains

Chain WA

28S rRNA

Nearby chains

Chain IA

L37

Chain M

L15