HL_8VVQ_059

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8VVQ|1|WA|A|3644, 8VVQ|1|WA|A|3645, 8VVQ|1|WA|U|3646, 8VVQ|1|WA|A|3650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_059 not in the Motif Atlas

Geometric match to HL_4WF9_043

Geometric discrepancy: 0.1289

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVQ|1|WA|U|3641
8VVQ|1|WA|U|3642
8VVQ|1|WA|U|3643
8VVQ|1|WA|A|3644
8VVQ|1|WA|A|3645
8VVQ|1|WA|U|3646
8VVQ|1|WA|U|3647
8VVQ|1|WA|A|3648
8VVQ|1|WA|A|3649
8VVQ|1|WA|A|3650
8VVQ|1|WA|A|3651

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain IA

L37

Chain IC

peptide