HL_8VVQ_069

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8VVQ|1|WA|A|4216, 8VVQ|1|WA|C|4223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_069 not in the Motif Atlas

Geometric match to HL_8CRE_054

Geometric discrepancy: 0.1166

The information below is about HL_8CRE_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VVQ|1|WA|U|4212
8VVQ|1|WA|C|4213
8VVQ|1|WA|A|4214
8VVQ|1|WA|A|4215
8VVQ|1|WA|A|4216
8VVQ|1|WA|C|4217
8VVQ|1|WA|G|4218
8VVQ|1|WA|G|4219
8VVQ|1|WA|U|4220
8VVQ|1|WA|A|4221
8VVQ|1|WA|A|4222
8VVQ|1|WA|C|4223
8VVQ|1|WA|G|4224

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain I

L10

Chain S

eL21