HL_8VVQ_070

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_070 not in the Motif Atlas

Geometric match to HL_8CRE_055

Geometric discrepancy: 0.159

The information below is about HL_8CRE_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8VVQ|1|WA|G|4252
8VVQ|1|WA|A|4253
8VVQ|1|WA|C|4254
8VVQ|1|WA|A|4255
8VVQ|1|WA|G|4256
8VVQ|1|WA|A|4257
8VVQ|1|WA|A|4258
8VVQ|1|WA|A|4259
8VVQ|1|WA|C|4260

Current chains

Chain WA

28S rRNA

Nearby chains

Chain J

uL5