HL_8VVQ_084

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8VVQ|1|WA|U|4978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_084 not in the Motif Atlas

Geometric match to HL_8CRE_069

Geometric discrepancy: 0.1141

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVQ|1|WA|G|4977
8VVQ|1|WA|U|4978
8VVQ|1|WA|A|4979
8VVQ|1|WA|G|4980
8VVQ|1|WA|A|4981
8VVQ|1|WA|C|4982
8VVQ|1|WA|G|4983
8VVQ|1|WA|A|4984
8VVQ|1|WA|C|4985

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL22