HL_8VVQ_099

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

8VVQ|1|ZA|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_099 not in the Motif Atlas

Geometric match to HL_8GLP_091

Geometric discrepancy: 0.2583

The information below is about HL_8GLP_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50525.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VVQ|1|ZA|G|377
8VVQ|1|ZA|U|378
8VVQ|1|ZA|C|379
8VVQ|1|ZA|G|380
8VVQ|1|ZA|C|381
8VVQ|1|ZA|C|382
8VVQ|1|ZA|G|383
8VVQ|1|ZA|U|384
8VVQ|1|ZA|G|385
8VVQ|1|ZA|C|386
8VVQ|1|ZA|C|387

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain IB

S8

Chain LB

S11